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| Lake Name | Bighead Carp | Brittle Naiad | Curlyleaf Pondweed | Eurasian Watermilfoil | Flowering Rush | Largemouth Bass Virus | Purple Loosestrife | Rusty Crawfish | Salt Cedar | Silver Carp | Spring Viremia of Carp | Water Hyacinth | Water Lettuce | White Perch | Yellow Floating Heart | Zebra Mussel |
| Airport Lake | | | X | X | | | | | | | | | | | | |
| Arrowhead Lake | | X | | | | | | | | | | | | | | |
| Badger Creek Lake | | | X | | | | | | | | | | | | | |
| Badger Lake | | | X | | | | | | | | | | | | | |
| Beaver Lake | | | X | | | | | | | | | | | | | |
| Belva Deer Campground Pond #1 | | X | X | | | | | | | | | | | | | |
| Belva Deer Campground Pond #2 | | X | X | | | | | | | | | | | | | |
| Belva Deer Campground Pond #3 | | X | X | | | | | | | | | | | | | |
| Belva Deer Park Pond | | X | X | | | | | | | | | | | | | |
| Big Creek Lake | | | X | | | | | | | | | | | | | |
| Big Sioux River | X | | | | | | | | | | | | | | | |
| Black Hawk Lake | | | | | | | | | | | | | | | | X |
| Black Pit | | | | X | | | | | | | | | | | | X |
| Blue Pit | | | X | X | | | | | | | | | | | | X |
| Bluebill Lake | | | | | | | | | | | | | | | | X |
| Boyer River (above Dunlap) | X | | | | | | | | | X | | | | | | |
| Boyer River (Dunlap to Missouri River) | X | | | | | | | | | X | | | | | | |
| Briggs Woods Lake | | | X | | | | | | | | | | | | | |
| Brushy Creek Lake | | X | X | X | | | | | | | | | | | | |
| Carter Lake | | | X | X | | | | | | | | | | | | |
| Casey Lake (aka Hickory Hills Lake) | | X | X | | | | | | | | | | | | | |
| Cedar River (above Nashua) | | | | | | | | X | | | | | | | | |
| Cedar River (Cedar Rapids to Moscow) | X | | | | | | | | | X | | | | | | |
| Cedar River (La Porte City to Cedar Rapids) | X | | | | | | | | | X | | | | | | |
| Cedar River (Nashua to La Porte City) | | | | | | | | | | X | | | | | | |
| Center Lake | | | X | | | | | | | | | | | | | X |
| Central Park Lake | | X | | | | | | | | | | | | | | |
| Central Park Pond | | X | | | | | | | | | | | | | | |
| Chariton River (above Rathbun Lake) | X | | | | | | | | | X | | | | | | |
| Chariton River (below Rathbun Lake) | X | | | | | | | | | X | | | | | | |
| Clear Lake | | | X | | | | | | | | | | | | | X |
| Cocklin Fish Farm | | X | | | | | | | | | | | | | | |
| Crawford Creek Impoundment | | X | | | | | | | | | | | | | | |
| Criss Cove County Park Pond | | | X | | | | | | | | | | | | | |
| Crystal Lake | | | X | X | | | | | | | | | | | | X |
| Dakins Lake | | X | X | | | | | | | | | | | | | |
| Des Moines River (Red Rock to Ottumwa) | X | | | | | | | | | X | | | | | | |
| Des Moines River (Farmington to Keokuk) | X | | | | | | | | | X | | | | | | |
| Des Moines River (Hydropower Dam in Ottumwa) | X | | | | | | | | | X | | | | | | |
| Des Moines River (Ottumwa to Farmington) | X | | | | | | | | | X | | | | | | |